Search results | Digital Commons of Moss Landing Marine Laboratories

Title: The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): Illuminating the Functional Diversity of Eukaryotic Life in the Oceans through Transcriptome Sequencing
Author: Keeling, Burki, Wilcox, Allam, Allen, Amaral-Zettler, Armbrust, Archibald, Bharti, Bell, Beszteri, Bidle, Cameron, Campbell, Caron, Cattolico, Collier, Coyne, Davy, Deschamps, Dyhrman, Edvardsen, Gates, Gobler, Greenwood, Guida, Jacobi, Jakobsen, James, Jenkins, John, Johnson, Juhl, Kamp, Katz, Kiene, Kudryavtsev, Leander, Lin, Lovejoy, Lynn, Marchetti, McManus, Nedelcu, Menden-Deuer, Miceli, Mock, Montresor, Moran, Murray, Nadathur, Nagai, Ngam, Palenik, Pawlowski, Petroni, Piganeau, Posewitz, Rengefors, Romano, Rumpho, Rynearson, Schilling, Schroeder, Simpson, Slamovits, Smith, Smith, Smith, Sosik, Stief, Theriot, Twary, Umale, Vaulot, Wawrik, Wheeler, Wilson, Xu, Zingone, Worden
Date: 2014-01-01T00:00:00Z

Title: Using accelerometers to determine the calling behavior of tagged baleen whales
Description: Low-frequency acoustic signals generated by baleen whales can propgate over vast distances, making the assignment of calls to specific individuals problematic. Here, we report the novel use of acoustic recording tags equipped with high-resolution accelerometers to detect vibrations from the surface of two tagged fin whales that directly match the timing of recorded acoustic signals. A tag deployed on a buoy in the vicinity of calling fin whales and a recording from a tag that had just fallen off a whale were able to detect calls acoustically but did not record corresponding accelerometer signals that were measured on calling individuals. Across the hundreds of calls measured on two tagged fin whales, the accelerometers response was generally anisotropic across all three axes, appeared to depend on tag placement and increased with the level of received sound. These data demonstrate that high-sample rate accelerometry can provide important insights into the acoustic behavior of baleen whales that communicate at low frequencies. This method helps identify vocalizing whales, which in turn enables the quantification of call rates, a fundamental component of models used to estimate baleen whale abundance and distribution from passive acoustic monitoring.
Author: Goldbogen, Stimpert, DeRuiter, Calambokidis, Friedlaender, Schorr, Moretti, Tyack, Southall
Date: 2014-01-01T00:00:00Z

Title: Spatial assessment of fin whale hotspots and their association with krill within an important Antarctic feeding and fishing ground
Description: Fin whale (Balaenoptera physalus quoyi) habitat use and its relationship to environmental conditions are generally unknown in the Southern Ocean, presenting challenges for predicting their seasonal occurrence and potential effects of fishing pressure and climate change on this endangered species. Using biological data collected during 14 shipboard surveys off the northern Antarctic Peninsula and oceanographic data from satellite remote sensing, we mapped the distribution of fin whale hotspots, Antarctic krill abundance (biomass from acoustics, concentrations from nets) and ocean conditions during mid- and late-summer to investigate the environmental determinants of whale hotspots. Generalized additive models (GAM) were used to test the hypothesis that intra-seasonal changes in fin whale hotspot distribution relate to sea surface temperature (SST), krill abundance and eddy kinetic energy (EKE). More whale hotspots (sightings and individuals) are observed during late- than mid-summer surveys. During mid-summer, hotspots occurred near Elephant Island while in late-summer they were distributed throughout the slope region in proximity to the mean location of the southern Antarctic Circumpolar Current Front. The spatial mean of EKE did not differ between mid- and late-summer surveys, but the spatial mean of SST was significantly warmer during late-summer. The GAM for mid-summer indicates that fin whale hotspots were positively related to SST, EKE and acoustically determined krill biomass. The GAM for late-summer indicates the hotspots were negatively related to net-based krill abundance and positively related to acoustic krill biomass and EKE. This study is important because environmental determinants of fin whale hotspots may be used as reference points for implementing future conservation plans for their recovering populations. © 2014 Springer-Verlag Berlin Heidelberg.
Author: Santora, Schroeder, Loeb
Date: 2014-01-01T00:00:00Z

Title: Anthropogenic disturbance and biodiversity of marine benthic communities in Antarctica: A regional comparison
Description: The impacts of two Antarctic stations in different regions, on marine sediment macrofaunal communities were compared: McMurdo, a very large station in the Ross Sea; and Casey, a more typical small station in East Antarctica. Community structure and diversity were compared along a gradient of anthropogenic disturbance from heavily contaminated to uncontaminated locations. We examined some of the inherent problems in comparing data from unrelated studies, such as different sampling methods, spatial and temporal scales of sampling and taxonomic uncertainty. These issues generated specific biases which were taken into account when interpreting patterns. Control sites in the two regions had very different communities but both were dominated by crustaceans. Community responses to anthropogenic disturbance (sediment contamination by metals, oils and sewage) were also different. At McMurdo the proportion of crustaceans decreased in disturbed areas and polychaetes became dominant, whereas at Casey, crustaceans increased in response to disturbance, largely through an increase in amphipods. Despite differing overall community responses there were some common elements. Ostracods, cumaceans and echinoderms were sensitive to disturbance in both regions. Capitellid, dorvelleid and orbiniid polychaetes were indicative of disturbed sites. Amphipods, isopods and tanaids had different responses at each station. Biodiversity and taxonomic distinctness were significantly lower at disturbed locations in both regions. The size of the impact, however, was not related to the level of contamination, with a larger reduction in biodiversity at Casey, the smaller, less polluted station. The impacts of small stations, with low to moderate levels of contamination, can thus be as great as those of large or heavily contaminated stations. Regional broad scale environmental influences may be important in determining the composition of communities and thus their response to disturbance, but there are some generalizations regarding responses which will aid future management of stations. © 2014 Stark et al., Antarctica
Author: Stark, Kim, Oliver
Date: 2014-01-01T00:00:00Z

Title: Dynamics of vibrio with virulence genes detected in Pacific harbor seals (Phoca vitulina richardii) off California: Implications for marine mammal health
Description: Given their coastal site fidelity and opportunistic foraging behavior, harbor seals (Phoca vitulina) may serve as sentinels for coastal ecosystem health. Seals using urbanized coastal habitat can acquire enteric bacteria, including Vibrio that may affect their health. To understand Vibrio dynamics in seals, demographic and environmental factors were tested for predicting potentially virulent Vibrio in free-ranging and stranded Pacific harbor seals (Phoca vitulina richardii) off California. Vibrio prevalence did not vary with season and was greater in free-ranging seals (29 %, n = 319) compared with stranded seals (17 %, n = 189). Of the factors tested, location, turbidity, and/or salinity best predicted Vibrio prevalence in free-ranging seals. The relationship of environmental factors with Vibrio prevalence differed by location and may be related to oceanographic or terrestrial contributions to water quality. Vibrio parahaemolyticus, Vibrio alginolyticus, and Vibrio cholerae were observed in seals, with V. cholerae found almost exclusively in stranded pups and yearlings. Additionally, virulence genes (trh and tdh) were detected in V. parahaemolyticus isolates. Vibrio cholerae isolates lacked targeted virulence genes, but were hemolytic. Three out of four stranded pups with V. parahaemolyticus (trh+ and/or tdh+) died in rehabilitation, but the role of Vibrio in causing mortality is unclear, and Vibrio expression of virulence genes should be investigated. Considering that humans share the environment and food resources with seals, potentially virulent Vibrio observed in seals also may be of concern to human health. © 2013 Springer Science+Business Media New York., Marine Mammals, Birds & Turtles Harbor Seals, CODEN: MCBEB
Author: Hughes, Greig, Miller, Byrne, Gulland, Harvey
Date: 2013-01-01T00:00:00Z

Title: Characterizing estuarine plume discharge into the coastal ocean using fatty acid biomarkers and pigment analysis
Description: The transformation of estuaries by human activities continues to alter the biogeochemical balance of the coastal ocean. The disruption of this balance can negatively impact the provision of goods and services, including fisheries, commerce and transportation, recreation and esthetic enjoyment. Here we examine a link, between the Elkhorn Slough and the coastal ocean in Monterey Bay, California (USA) using a novel application of fatty acid and pigment analysis. Fatty acid analysis of filtered water samples showed biologically distinct water types between the Elkhorn Slough plume and the receiving waters of the coastal ocean. A remarkable feature of the biological content of the plume entering the coastal ocean was the abundance of bacteria-specific fatty acids, which correlated well with concentrations of colored dissolved organic matter (CDOM). Pigment analysis showed that plume waters contained higher concentrations of diatoms and cryptophytes, while the coastal ocean waters showed higher relative concentrations of dinoflagellates. Bacteria and cryptophytes can provide a source of labile, energy-rich organic matter that may be locally important as a source of food for pelagic and benthic communities. Surface and depth surveys of the plume show that the biogeochemical constituents of the slough waters are injected into the coastal waters and become entrained in the northward flowing, nearshore current of Monterey Bay. Transport of these materials to the northern portion of the bay can fuel a bloom incubator, which exists in this region. This study shows that fatty acid markers can reveal the biogeochemical interactions between estuaries and the coastal ocean and highlights how man-made changes have the potential to influence coastal ecological change. © 2014 Elsevier Ltd.
Author: Fischer, Ryan, Levesque, Welschmeyer
Date: 2014-01-01T00:00:00Z

Title: How many organisms are in ballast water discharge?: A framework for validating and selecting compliance monitoring tools
Description: As regulations governing the discharge of living organisms in ships' ballast water enter into force, tools to rapidly and easily measure compliance with the discharge standards will be essential. To assess, validate, and select compliance tools, a framework-consisting of three parts-is presented: proof-of-concept, validation and verification, and final selection stages. Next, a case study describing the proof-of-concept stage is discussed. Specifically, variable fluorescence was evaluated as an approach for determining compliance with the discharge standard for living organisms ≥10. μm and <50. μm (typically protists). Preliminary laboratory experiments were conducted, which were followed by an expert workshop to gauge the feasibility of this approach and propose hypothetical thresholds indicating when the discharge standard is undoubtedly exceeded. Subsequently, field trials were conducted to assess this approach and recommended thresholds. All results were favorable, indicating the validation and verification stages are merited to further evaluate fluorometers as compliance monitoring tools. © 2014.
Author: Drake, Tamburri, First, Smith, Johengen
Date: 2014-01-01T00:00:00Z